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Table representation of search results timeline featuring number of search results per year.

Year Number of Results
2008 2
2009 2
2010 5
2011 2
2012 4
2013 2
2014 5
2015 3
2016 3
2017 4
2018 3
2019 5
2020 6
2021 4
2022 3
2023 6
2024 1

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55 results

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Page 1
A comparative encyclopedia of DNA elements in the mouse genome.
Yue F, Cheng Y, Breschi A, Vierstra J, Wu W, Ryba T, Sandstrom R, Ma Z, Davis C, Pope BD, Shen Y, Pervouchine DD, Djebali S, Thurman RE, Kaul R, Rynes E, Kirilusha A, Marinov GK, Williams BA, Trout D, Amrhein H, Fisher-Aylor K, Antoshechkin I, DeSalvo G, See LH, Fastuca M, Drenkow J, Zaleski C, Dobin A, Prieto P, Lagarde J, Bussotti G, Tanzer A, Denas O, Li K, Bender MA, Zhang M, Byron R, Groudine MT, McCleary D, Pham L, Ye Z, Kuan S, Edsall L, Wu YC, Rasmussen MD, Bansal MS, Kellis M, Keller CA, Morrissey CS, Mishra T, Jain D, Dogan N, Harris RS, Cayting P, Kawli T, Boyle AP, Euskirchen G, Kundaje A, Lin S, Lin Y, Jansen C, Malladi VS, Cline MS, Erickson DT, Kirkup VM, Learned K, Sloan CA, Rosenbloom KR, Lacerda de Sousa B, Beal K, Pignatelli M, Flicek P, Lian J, Kahveci T, Lee D, Kent WJ, Ramalho Santos M, Herrero J, Notredame C, Johnson A, Vong S, Lee K, Bates D, Neri F, Diegel M, Canfield T, Sabo PJ, Wilken MS, Reh TA, Giste E, Shafer A, Kutyavin T, Haugen E, Dunn D, Reynolds AP, Neph S, Humbert R, Hansen RS, De Bruijn M, Selleri L, Rudensky A, Josefowicz S, Samstein R, Eichler EE, Orkin SH, Levasseur D, Papayannopoulou T, Chang KH, Skoultchi A, Gosh S, Disteche C, Treu… See abstract for full author list ➔ Yue F, et al. Among authors: boyle ap. Nature. 2014 Nov 20;515(7527):355-64. doi: 10.1038/nature13992. Nature. 2014. PMID: 25409824 Free PMC article.
Deciphering ENCODE.
Diehl AG, Boyle AP. Diehl AG, et al. Among authors: boyle ap. Trends Genet. 2016 Apr;32(4):238-249. doi: 10.1016/j.tig.2016.02.002. Epub 2016 Mar 5. Trends Genet. 2016. PMID: 26962025 Review.
Systematic investigation of allelic regulatory activity of schizophrenia-associated common variants.
McAfee JC, Lee S, Lee J, Bell JL, Krupa O, Davis J, Insigne K, Bond ML, Zhao N, Boyle AP, Phanstiel DH, Love MI, Stein JL, Ruzicka WB, Davila-Velderrain J, Kosuri S, Won H. McAfee JC, et al. Among authors: boyle ap. Cell Genom. 2023 Sep 15;3(10):100404. doi: 10.1016/j.xgen.2023.100404. eCollection 2023 Oct 11. Cell Genom. 2023. PMID: 37868037 Free PMC article.
Evidence-ranked motif identification.
Georgiev S, Boyle AP, Jayasurya K, Ding X, Mukherjee S, Ohler U. Georgiev S, et al. Among authors: boyle ap. Genome Biol. 2010;11(2):R19. doi: 10.1186/gb-2010-11-2-r19. Epub 2010 Feb 15. Genome Biol. 2010. PMID: 20156354 Free PMC article.
Sperm chromatin structure and reproductive fitness are altered by substitution of a single amino acid in mouse protamine 1.
Moritz L, Schon SB, Rabbani M, Sheng Y, Agrawal R, Glass-Klaiber J, Sultan C, Camarillo JM, Clements J, Baldwin MR, Diehl AG, Boyle AP, O'Brien PJ, Ragunathan K, Hu YC, Kelleher NL, Nandakumar J, Li JZ, Orwig KE, Redding S, Hammoud SS. Moritz L, et al. Among authors: boyle ap. Nat Struct Mol Biol. 2023 Aug;30(8):1077-1091. doi: 10.1038/s41594-023-01033-4. Epub 2023 Jul 17. Nat Struct Mol Biol. 2023. PMID: 37460896 Free PMC article.
SquiggleNet: real-time, direct classification of nanopore signals.
Bao Y, Wadden J, Erb-Downward JR, Ranjan P, Zhou W, McDonald TL, Mills RE, Boyle AP, Dickson RP, Blaauw D, Welch JD. Bao Y, et al. Among authors: boyle ap. Genome Biol. 2021 Oct 27;22(1):298. doi: 10.1186/s13059-021-02511-y. Genome Biol. 2021. PMID: 34706748 Free PMC article.
Annotating and prioritizing human non-coding variants with RegulomeDB v.2.
Dong S, Zhao N, Spragins E, Kagda MS, Li M, Assis P, Jolanki O, Luo Y, Cherry JM, Boyle AP, Hitz BC. Dong S, et al. Among authors: boyle ap. Nat Genet. 2023 May;55(5):724-726. doi: 10.1038/s41588-023-01365-3. Nat Genet. 2023. PMID: 37173523 Free PMC article. No abstract available.
Multiplexed long-read plasmid validation and analysis using OnRamp.
Mumm C, Drexel ML, McDonald TL, Diehl AG, Switzenberg JA, Boyle AP. Mumm C, et al. Among authors: boyle ap. Genome Res. 2023 May;33(5):741-749. doi: 10.1101/gr.277369.122. Epub 2023 May 8. Genome Res. 2023. PMID: 37156622 Free PMC article.
55 results